| Boston College (1) | Spokane (2) | High Plains (3) | Pnutsen (4) | South Hill (5) | Midwest (6) | Dakota (7) | Allegheny (8) | |||
| Drafted Players | 1 | Aaron Heilman | Ty Wigginton | Jae Seo | Juan Dominguez | Gil Meche | Billy Hall | Willie Bloomquist | David Ross | |
| 2 | Mike DeJean | Geronimo Gil | Brian Fuentes | Mark Ellis (IR) | Matt Mantei | Oscar Villareal | Wes Obermueller | Mike MacDougal | ||
| 3 | PASSES | PASSES | Jose Acevedo | Terry Mulholland | Brent Mayne | PASSES | PASSES | Edgar Gonzalez | ||
| 4 | PASSES | PASSES | Al Levine | Raul Chavez | PASSES | PASSES | PASSES | Claudio Vargas | ||
| 5 | PASSES | PASSES | Ray Olmedo | Mike Gallo | PASSES | PASSES | PASSES | Rey Ordonez | ||
| 6 | PASSES | PASSES | Dave Berg | PASSES | PASSES | PASSES | PASSES | PASSES | ||
| 7 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | ||
| Pullbacks | 1 | PASSES | Jose Macias | Mark Johnson | Russ Branyan | Paul Abbott | PASSES | PASSES | Dave Williams | |
| 2 | PASSES | PASSES | Blaine Neal | PASSES | PASSES | Jimmy Gobble | ||||
| 3 | PASSES | PASSES | Jason Stanford | PASSES | PASSES | Casey Fossum | ||||
| 4 | PASSES | PASSES | PASSES | PASSES | PASSES | Ben Davis | ||||
| 5 | PASSES | PASSES | PASSES | PASSES | PASSES | Joe Borchard | ||||
| 6 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | ||||
| Unprotected (Draft Eligible) |
1 | Brian Boehringer | Aaron Guiel | Andres Galarraga | Chris George | Chris Stynes | Dane Sardinha (IR) | Aquilino Lopez | JR House | |
| 2 | Ellis Burks | Colby Lewis | Andy Ashby | Jason Grabowski | Keith Osik | Dave Gassner (UC) | Bo Hart | |||
| 3 | Joe Roa | Damian Moss | Darren Bragg | Kevin Correia | Raul Gonzalez | Fred McGriff | Denny Hocking | |||
| 4 | Shawn Wooten | Kevin Appier | Francis Beltran | Kevin Jarvis | Ron Calloway | Mark Corey | ||||
| 5 | Nelson Figueroa | Josh Stewart | Sterling Hitchcock | |||||||
| 6 | Tom Wilson | Wills Roberts | ||||||||
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| Durham (9) | Bremerton (10) | Chandler (11) | Seattle (12) | Meaner (13) | Northern Virginia (14) | Philadelphia (15) | Madeleine (16) | |||
| Drafted Players | 1 | Dustin Hermanson | Joey Gathright | Jason Michaels | Scott Williamson | Danny Bautista | Ben Grieve | Michael Restovich | Bobby Kielty | |
| 2 | Augie Ojeda | Joe Borowski | John Flaherty | DJ Carrasco | Javier Lopez | Matt Herges | Todd Linden | Aaron Sele | ||
| 3 | John McDonald | Gary Bennett | Eddie Perez | PASSES | Juan Gonzalez | Hiram Bocachica | Brian Anderson | PASSES | ||
| 4 | PASSES | John Franco | Mike DiFelice | PASSES | Danny Patterson | PASSES | Esteban German | PASSES | ||
| 5 | PASSES | Dave Hansen | PASSES | PASSES | Enrique Wilson | PASSES | Sean Douglass | PASSES | ||
| 6 | PASSES | Amaury Telemaco | PASSES | PASSES | PASSES | PASSES | Gabe White | PASSES | ||
| 7 | PASSES | Damian Jackson | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | ||
| Pullbacks | 1 | Chris Woodward | Marlon Anderson | Ricky Ledee | PASSES | Scott Sauerbeck | Roberto Hernandez | Scott Schoeneweis | Corky Miller | |
| 2 | PASSES | Paul Bako | Ramon Vazquez | PASSES | Pete Munro | Jeff Fassero | Kurt Ainsworth | PASSES | ||
| 3 | PASSES | Michael Ryan | PASSES | PASSES | J.J. Davis | Andrew Good | PASSES | PASSES | ||
| 4 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | |||
| 5 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | |||
| 6 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | |||
| Unprotected (Draft Eligible) |
1 | Greg Norton | Dan Wright | Darren Holmes (IR) | Armando Almanza | Adam Hyzdu | Gabe Kapler | Chad Fox | Adam Riggs | |
| 2 | Jack Cressend | Jason Standridge | Jason Boyd | Nate Cornejo | Justin Wayne | Shane Reynolds | John Vanderwal | Eric Dubose | ||
| 3 | Shane Halter | Pete La Forest (IR) | Jason Kerschner | Rocky Biddle | Mike Neu | Jung Bong | ||||
| 4 | Todd Ritchie | Mark Guthrie (IR) | Steve Sparks | Stephen Randolph | Leo Estrella | |||||
| 5 | Warren Morris (IR) | Pat Hentgen | Tim Salmon | Ricky Gutierrez | ||||||
| 6 | Rodrigo Rosario (IR) | |||||||||
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| Georgia (17) | Roger (18) | Silver City (19) | MetroMess (20) | Galaxy (21) | Tri-State (22) | Aliso (23) | Baltimore (24) | |||
| Drafted Players | 1 | Scott Eyre | Alex Gonzalez | * SKIPPED * | Ryan Ludwick | Arthur Rhodes | Nick Punto | Gary Knotts | Todd Zeile | |
| 2 | Joey Eischen | Tim Redding | * SKIPPED * | Doug Waechter | Freddy Sanchez | Tomas Perez | Rob Bell | Dave Burba | ||
| 3 | John Riedling | Sandy Alomar | * SKIPPED * | Robert Fick | PASSES | Dave Weathers | Doug Glanville | Jason Christiansen | ||
| 4 | PASSES | Robert Machado | * SKIPPED * | PASSES | PASSES | Timo Perez | Eduardo Perez | Shane Spencer | ||
| 5 | PASSES | PASSES | * SKIPPED * | PASSES | PASSES | Chris Spurling (IR) | Kerry Robinson | Robin Ventura | ||
| 6 | PASSES | PASSES | * SKIPPED * | PASSES | PASSES | * SKIPPED * | PASSES | Einar Diaz | ||
| 7 | PASSES | PASSES | * SKIPPED * | PASSES | PASSES | * SKIPPED * | PASSES | * SKIPPED * | ||
| Pullbacks | 1 | Jamey Wright | Todd Wellemeyer | Rey Sanchez | RA Dickey | PASSES | Gary Glover | Chris Widger | Phil Norton | |
| 2 | Carlos Baerga | Franklyn German | Brook Fordyce | Jeff Nelson | PASSES | Terry Adams | Chris Magruder | |||
| 3 | PASSES | PASSES | Curt Leskanic | PASSES | PASSES | Elmer Dessens | Ruben Mateo | |||
| 4 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | ||||
| 5 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | ||||
| 6 | PASSES | PASSES | PASSES | PASSES | PASSES | PASSES | ||||
| Unprotected (Draft Eligible) |
1 | Scott Stewart | Ben Howard | Bubba Crosby | Damian Rolls | Ben Weber | Brian Buchanan | Denny Stark | Bobby Estalella | |
| 2 | Billy McMillon | Jeremi Gonzalez | Jason Simontacchi | Jeff D'Amico | Colin Porter | Grant Roberts | Felix Heredia | Darren Oliver | ||
| 3 | Henry Mateo | Kerry Ligtenberg | Maseo Kida | Mike Fetters | Fernando Vina | Greg Colbrunn | Howie Clark | Mendy Lopez | ||
| 4 | Tom Goodwin | Matt Kinney | Turk Wendell | Garrett Stephenson (IR) | John Bale (IR) | Jason Bere (IR) | Ramon Santiago | |||
| 5 | Will Cunnane | Randall Simon | Wayne Franklin | Greg Myers | Tom Prince | Tony Fiore (IR) | ||||
| 6 | Pedro Feliciano | Felix Heredia | ||||||||
| 7 | Rod Beck | |||||||||
| 8 | Wil Cordero | |||||||||
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